Physician lesson

Infection prevention and vaccination in cancer patients

Fluoroquinolones, antifungals, pneumocystis, herpes and shingles; which vaccine, and when?

Updated: 28 October 20261 min read4 references

Key points

  • Fluoroquinolone prophylaxis only for expected deep and prolonged neutropenia (ANC below 100 for more than 7 days) [1].
  • A mould-active antifungal in AML/MDS induction and in GVHD [1].
  • Co-trimoxazole for pneumocystis with high-risk treatments [1, 2].
  • Inactivated vaccines preferably two weeks before chemotherapy; live vaccines are contraindicated during treatment [3].

Antimicrobial prophylaxis

Who gets which drug? [1, 2]
InfectionHigh-risk groupDrug
BacteriaDeep neutropenia for more than 7 days (acute leukaemia induction, transplant)Levofloxacin or ciprofloxacin
Fungi (moulds)AML or MDS induction, GVHD under treatmentPosaconazole (or another mould-active antifungal)
PneumocystisThe equivalent of 20 mg prednisone or more for 4 weeks or longer, ALL, purine analogues (fludarabine), alemtuzumab, temozolomide with radiotherapy, allogeneic transplantCo-trimoxazole (three times a week or daily)
Herpes and shinglesBortezomib, purine analogues, leukaemia induction, transplant, daratumumabAciclovir or valaciclovir
Hepatitis BHBsAg or anti-HBc positive with anti-CD20 or high-risk chemotherapyEntecavir or tenofovir [4]

Vaccination

  • Influenza: inactivated vaccine every year for the patient and household contacts [3].
  • Pneumococcus: a conjugate vaccine (for example PCV20, or PCV15 followed by PPSV23) [3].
  • Shingles: the recombinant (non-live) vaccine in immunocompromised adults; the live shingles vaccine is contraindicated [3].
  • COVID-19 and hepatitis B according to the guideline [3].
  • Timing: preferably at least 2 weeks before chemotherapy; after anti-CD20 treatment the vaccine response is weak for about 6 months [3].
  • Live vaccines: MMR, varicella and yellow fever are contraindicated during chemotherapy and for at least 3 months afterwards; after transplant, revaccination starts 3 to 6 months later [3].

References

4 references
Show all references, 2 with a study cardClose the reference list

Numbers in the text, such as [1], refer to these sources. Sources with a “Study card” button are summarised in the site’s evidence library.

  1. 1
    Antimicrobial Prophylaxis for Adult Patients With Cancer-Related Immunosuppression: ASCO and IDSA Clinical Practice Guideline UpdateTaplitz RA, Kennedy EB, Bow EJ, et al · J Clin Oncol · 2018;36:3043-3054
    Study cardDOIPubMed Back to text: 1 2 3 4
  2. 2
    ECIL guidelines for preventing Pneumocystis jirovecii pneumonia in patients with haematological malignancies and stem cell transplant recipientsMaertens J, Cesaro S, Maschmeyer G, et al · J Antimicrob Chemother · 2016;71:2397-404
    DOIPubMed Back to text: 1 2
  3. 3
    Vaccination of Adults With Cancer: ASCO GuidelineKamboj M, Bohlke K, Baptiste DM, et al · J Clin Oncol · 2024;42:1699-1721
    Study cardDOIPubMed Back to text: 1 2 3 4 5 6 7
  4. 4
    Hepatitis B Virus Screening and Management for Patients With Cancer Prior to Therapy: ASCO Provisional Clinical Opinion UpdateHwang JP, Feld JJ, Hammond SP, et al · J Clin Oncol · 2020;38:3698-3715

This page is based on reputable scientific sources and was last updated on 28 October 2026. The content of this website is for educational and informational purposes only and does not replace consultation, diagnosis or treatment by a specialist physician. Consult your treating physician about any treatment decision.